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Computational phylogenetics
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11	1 An overview of phylogeny reconstruction 1.1 Introduction : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 1.2 What are phylogenies used for in biological Add to Reading List Source URL: web.engr.illinois.edu Language: English - Date: 2014-08-30 15:57:35 Phylogenetics Biology Outgroup Computational phylogenetics Molecular phylogenetics Phylogenetic tree Systematics Phylogenetic network Species Most recent common ancestor Lineage Horizontal gene transfer
12	Vol. 1 noPages 1–1 BIOINFORMATICS Using an alignment of fragment strings for Add to Reading List Source URL: iddo-friedberg.net Language: English - Date: 2013-02-06 13:49:51 Bioinformatics Biology Computational phylogenetics Protein methods Matrices Protein structure Sequence alignment Substitution matrix Multiple sequence alignment BLOSUM Protein structure prediction Structural alignment
13	PAM matrix for BLAST algorithm Churbanov Alexander April 11,2002 Abstract In this paper we will consider math background for PAM (Point Accepted Mutation). PAM matrix is used extensively in BLAST (Basic Local Alignment S Add to Reading List Source URL: bioinfo.ict.ac.cn Language: English - Date: 2014-11-28 11:05:21 Biology Bioinformatics Genetics Computational phylogenetics Point accepted mutation Matrices Molecular biology BLAST Amino acid Position weight matrix Peptide sequence Mutation
14	John Benjamins Publishing Company This is a contribution from Diachronica 30:2 © 2013. John Benjamins Publishing Company This electronic file may not be altered in any way. The author(s) of this article is/are permitte Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2014-08-30 15:57:22 Phylogenetics Computational phylogenetics Linguistics Biology Historical linguistics Academia Maximum parsimony Quantitative comparative linguistics Phylogenetic tree Character evolution Perfect phylogeny Luay Nakhleh
15	Designing Seeds for Similarity Search in Genomic DNA Jeremy Buhler∗† () Uri Keich‡ () Yanni Sun∗ () Submitted to RECOMB 2003 Add to Reading List Source URL: www.maths.usyd.edu.au Language: English - Date: 2002-11-18 04:53:06 Biology Computational phylogenetics Markov models Graph theory Markov chain BLAST Seed Academia
16	Application for Registration (and possible Travel Award) to the 2016 Phylogenomics Symposium and Software School Registration is required, whether or not you wish to request a travel award Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2016-05-10 10:11:36 Computational phylogenetics Bioinformatics Biology Tandy Warnow Genetics Academia Multiple sequence alignment Phylogenomics Sequence alignment Email
17	BIOINFORMATICS ORIGINAL PAPER Sequence analysis Add to Reading List Source URL: bioinformatics.oxfordjournals.org Language: English Biology Bioinformatics Computational phylogenetics Molecular biology Genetics Environmental microbiology Binning MEGAN Sequence alignment Nucleic acid sequence BLAST DNA sequencing
18	Ensemble Multiple Sequence Alignment via Advising Dan DeBlasio John Kececioglu Department of Computer Science University of Arizona Add to Reading List Source URL: www.dandeblasio.com Language: English - Date: 2015-09-11 11:39:03 Bioinformatics Computational phylogenetics Biology Sequence alignment Multiple sequence alignment Estimator Statistics
19	Master Thesis Submitted in partial fulfilment of the requirements for the degree of Master of Arts in General Linguistics Alignment and word comparison Add to Reading List Source URL: www.evolaemp.uni-tuebingen.de Language: English - Date: 2014-10-22 10:33:51 Computational phylogenetics Bioinformatics Dynamic programming NeedlemanWunsch algorithm Sequence alignment Biology Applied mathematics Mathematical and theoretical biology
20	Ensemble Multiple Sequence Alignment via Advising ∗ Dan DeBlasio John Kececioglu Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2015-09-04 19:30:11 Computational phylogenetics Bioinformatics Biology Statistics T-Coffee BLAST Multiple sequence alignment ProbCons Sequence alignment MUSCLE Probalign Clustal